[PATCH] User manual update: preferences and main menu descriptions

[Willem Ferguson]

     Updates to user manual: Preferences and Main menu

     This patch updates the section on Preferences to accommodate
     the newer additions to this Panel.
     (Three images removed, five images inserted)

     The section dealing with the description of all the main menu items
     is updated.

     One small change to the FAQ section.

     A few small typo edits elsewhere in manual.

     Signed-off-by: Willem Ferguson <willemferguson at zoology.up.ac.za>

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